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marta di girolami
Nuovo Arrivato
6 Messaggi |
 Inserito il - 19 giugno 2011 : 22:35:26
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>contig07997 length=2117 numreads=1353
CCCCAAAACCCCAAAACCCCAAAACCCCAATTAATAATATAATTATTGATAATAGCACAATAATGATAGGATCGAGA
AGTATGCCAGATATACATCAACCTAAGATTGCTCAACCTGGGCCATTAATGTTAAATCCATTATTCAAAAACTCTAA
ATTAGTAAGTAAAGATCTAAAATTATTTAATTTTATGTGAAAATCTTACATGTTCCTTGGATAAATTGGATAATAAA
CTCTTGAAATTTTATTTATTTTAGGAATAACTAATCTATAGAGAAAAACTAAGAATAATGGGTTCAGAAGAACACAG
CAGAGATCATCAATTCCTTCATTAAAGCCATCTTATATTCAGAATAGAGTAAGAGAGTTTATAATTTATATTTAGAA
CTCACATACCAAAGGATTCGGATCTGTAAGTTGAAATAAGATAATCTTATATCTTAAGCAGCATATTTTTAGCAATA
ATCTATATTATTTTGTTTGTACAAGCTTCAGAATTATTGAAATAAAATCGTACTTAAGACAAGATTATATATTTATA
CACCTGAAGCAATTATTATTTTTAATCTAACTTAAAATAATGTAGTACACAAATTCTTGGGTAAAGAGTTTGTAGTA
TGTATTAAATTAAAGAGTGTAAAAATATGAAATTTCATAAATAGCGGGAAATAGTTCTATTACTTTCTTCACAATTT
TCTATCAAAATAAAACTTATTATGGTTTATGTCTAATATCAATAAATAGATGCAAAGAAATACTAATAGAGATTTAT
ATAATAAAGATGAATTTAAGATTAACTTTGATGTGTACAACTTCAAACGACTCCATCAACCGCAATTATATACAGGT
GCGAGAAAGTTGCAGAAGATCAATGATTTGAAGAAAAGTAAATATTTATAATCATAAAATTTAGCTCTCCCTTTTCA
TTTCGAAGATGATAATTTATTTATTACAAATACTAAAATGATGAAAGGTAAGCTAGAGTAAATCTTAATTTTAGGCA
TTAAAAGAGATAAATTCCTACAGAGACAAATAGAACAGGTGCAGATGATAGAGAAAGAAAAAGAAGAGGAGGAGTCA
GATTATATAGTTCCACAATTAGATACCATTAGAAAATTGGTGAAGAAAGAGTCTAAATTCTATTCAAACAAAGATCC
GAATGATATGAACAGACCTAAATTCCCAATAAGATTTGCTGCTAAACCATTTATCCATTATGGGTATGGAGCCAAAG
TTGCAGCTATAAAAAATAAAGAAACAGAGGATAGGATCAAAGAAAATGATAATAAAATGAAAATATACATTGCCCTA
CTCCAAAAAGAAAAACGAAGCAAAAAGCCCACCATCGAAATCATAGAAAGTCAACGTAAAAGCCCTATGAAATACCT
CCTTGAAGAAACCCAAAAATCCATTGACATAAGCGAAGATTTAAAACCAATCAACATCGAAACCAGACCCAAAAACA
TCGACCTACAATATCCATCTCCTCACCACTCCTCCCAGCCAACCCTCGCAATCCTCAATTCCGAAGAAACTCTTCCT
CAGATCCAACCTACCGAAACCCCATCCAATCCCAAGTTTTACCACTTAGAAAACTCAGAAAATATAATTCCAAAAAA
CAGACCTCTCCAAAACCAATCCCTACTCCCTTCTCCTAACAAACTTAATCCAAACGACTCCATCCTCCTCCAAAGCA
GCTTACTCCAAGAAGTATCAATGCTAAATAAATCAGTAATCGAGAAAAACAACGAGCACATCCCAAAACAAAAAATC
ATAACCAGCATTAGGAAATATGACGATAGATGTAATTAAAAAACTAATATATAGGTATTAATTACCATAAAGCCCAC
AGAAGCTTAGTAGACTTAACAGTTGGCTATATGTTCAAGAGTAAAGCATGAAACAACCCAGATAAAGATACGACGAC
CAGGTACAAGTAATTATTCATTTTTAGAGAGAAATTATTAGAACAGAATATGAAAGATATAAATAATATTAAGAAAG
AACAAATGCTTAATTATAGTGTAGATCCATACTCTGGAGATACTTAATTTATATTCATTTCGTATTTCAATTTTGGT
TGTCTTTTAAGGGGTTTTGGGGTTTTGGGGTTTTGGGG
ragazzi ho questa sequenza proteica devo analizzarla dapprima con orf finder e trovare codone di inizio e stop selezionando il frame + lungo e l'ho fatto,poi procedendo mi dice che non ci sono domini conservati e il punteggio della query è 80 del subject 325 ,quindi sospetto ci sia un introne..voi come approccereste questo problema?
Grazie a tutti coloro che vorranno aiutarmi 
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analisi seq. proteica
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